SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCCCCGGTTCTCT
1._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
2._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
3._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
4._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
5._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
6._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
7._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
8._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
9._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
10._RUQ_1531
__CCCC__CT_CC__TTCC_
11._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
15._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
16._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
17._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
18._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
19._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
20._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
21._RUQ_1531
AACCCCCC____CCCCGG_CC_
22._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
23._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
24._PA156[PER]
___CC____CC___CC_
25._RUQ_1531
___CC__CT_______
26._RUQ_1531
AACC_CCGGAG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGATAACCCG
1._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
2._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
3._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
4._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
5._PA_156_[PER]
__AA__CG____ATAA_CG
6._PA_156_[PER]
__AA__CG____ATAA_CG
7._PA_156_[PER]
__AA__CG____ATAA_CG
8._PA_156_[PER]
__AA__CG____ATAA_CG
9._PA_156_[PER]
__AA__CG____ATAA_CG
10._RUQ_1531
____CC____GG_AACCGG
11._GC-05-137-3-39
AACCGG_CCCGTTAATTGGATAACCGG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
14._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
15._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
16._PA_156_[PER]
__GG__CG____ATAA_GG
17._PA_156_[PER]
__GG__CG____ATAA_GG
18._PA_156_[PER]
__GG__CG____ATAA_GG
19._PA_156_[PER]
__GG__CG____ATAA_GG
20._PA_156_[PER]
__GG__CG____ATAA_GG
21._RUQ_1531
__GG__CG____ATAA_GG
22._PA_156_[PER]
__GG__CG____ATAA_GG
23._PA_156_[PER]
__GG__CG____ATAA_GG
24._PA156[PER]
____GG_TT__GG_AACCCC
25._RUQ_1531
__GGTT_________GG
26._RUQ_1531
TTCCGGGG_CGAAAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAGCGCCAGTTGGTTAGCTAGCC
1._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
2._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
3._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
4._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
5._PA_156_[PER]
AA___CG_AGTT__AG___
6._PA_156_[PER]
AA___CG_AGTT__AG___
7._PA_156_[PER]
AA___CG_AGTT__AG___
8._PA_156_[PER]
AA___CG_AGTT__AG___
9._PA_156_[PER]
AA___CG_AGTT__AG___
10._RUQ_1531
___GGCGCCAGGG__AGTT__
11._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
14._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
15._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
16._PA_156_[PER]
AA___CG_AGGG__AG___
17._PA_156_[PER]
AA___CG_AGGG__AG___
18._PA_156_[PER]
AA___CG_AGGG__AG___
19._PA_156_[PER]
AA___CG_AGGG__AG___
20._PA_156_[PER]
AA___CG_AGGG__AG___
21._RUQ_1531
AA___CG_AGGG__AG___
22._PA_156_[PER]
AA___CG_AGGG__AG___
23._PA_156_[PER]
AA___CG_AGGG__AG___
24._PA156[PER]
___GGCG____TT_TT__
25._RUQ_1531
____CG_AG____TT__
26._RUQ_1531
AAAAACGGCGCCAGCCCCAAAGAAGGGG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGGGTTTTCCCT
1._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
2._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
3._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCCCT
4._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTT_CT
5._PA_156_[PER]
__CT_________CCCT
6._PA_156_[PER]
__CT_________CCCT
7._PA_156_[PER]
__CT_________CCCT
8._PA_156_[PER]
__CT_________CCCT
9._PA_156_[PER]
__CT__________CT
10._RUQ_1531
GGTT__GG______TTCC_
11._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
13._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
14._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCCC
15._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTT_CC
16._PA_156_[PER]
__TT_________CCCC
17._PA_156_[PER]
__TT_________CCCC
18._PA_156_[PER]
__TT_________CCCC
19._PA_156_[PER]
__TT_________CCCC
20._PA_156_[PER]
__TT_________CCCC
21._RUQ_1531
__TT_________CCCC
22._PA_156_[PER]
__TT_________CCCC
23._PA_156_[PER]
__TT__________CC
24._PA156[PER]
_TT_AA________CC_
25._RUQ_1531
____GG_________
26._RUQ_1531
CC_AA_GGAAGG_GGAGCCAAGGGG
 5758596061626364656667686970
_Input profile
TTAACCCTCTAAGGGGAAAAGTGGGGTT
1._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
2._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
3._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
4._GC-05-138-3-40
TTAACCCTCTAAGGGGAAAAGTGGGGTT
5._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
6._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
7._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
8._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
9._PA_156_[PER]
__CC_CTAAGG_AAAAGTGG__
10._RUQ_1531
TTGGCCCTCTAA_GGACAATTGGGG_
11._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
12._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
13._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
14._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
15._GC-05-137-3-39
TTAGCCCTCTAAGGGGACAATTGGGGCT
16._PA_156_[PER]
____CTAAGG_ACAATTGG__
17._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
18._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
19._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
20._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
21._RUQ_1531
__CC_CTAAGG_ACAATTGG__
22._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
23._PA_156_[PER]
__CC_CTAAGG_ACAATTGG__
24._PA156[PER]
__GGCT_AA_GGACAA____
25._RUQ_1531
_AG______ACAA_GGGG_
26._RUQ_1531
AAAGGGAGAGAAGGGGACAAAACCGG_
 7172737475767778798081828384
_Input profile
CCAGCTAAAAACAAAACCGGCCATAACT
1._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
2._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
3._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
4._GC-05-138-3-40
CCAGCTAAAAACAAAACCGGCCATAACT
5._PA_156_[PER]
_AGCT_____CCGG___CT
6._PA_156_[PER]
_AGCT_____CCGG___CT
7._PA_156_[PER]
_AGCT_____CCGG___CT
8._PA_156_[PER]
_AGCT_____CCGG___CT
9._PA_156_[PER]
_AGCT_____CCGG___CT
10._RUQ_1531
________ACGG__ACTT
11._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
12._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
13._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
14._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
15._GC-05-137-3-39
CCAATTCCAGAAAAAGACGGCCATACTT
16._PA_156_[PER]
_AATT_____ACGG___TT
17._PA_156_[PER]
_AATT_____ACGG___TT
18._PA_156_[PER]
_AATT_____ACGG___TT
19._PA_156_[PER]
_AATT_____ACGG___TT
20._PA_156_[PER]
_AATT_____ACGG___TT
21._RUQ_1531
_AATT_____ACGG___TT
22._PA_156_[PER]
_AATT_____ACGG___TT
23._PA_156_[PER]
_AATT_____ACGG___TT
24._PA156[PER]
CC________CC____
25._RUQ_1531
_AA______ACGG__AC_
26._RUQ_1531
__AACCAGAAAA_ACCCGGATACAA
 85868788899091929394    
_Input profile
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
1._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
2._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
3._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
4._GC-05-138-3-40
TTTTCCAATTCTTTTTATGGX_XX_XX_XX_X
5._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
6._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
7._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
8._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
9._PA_156_[PER]
TTTT_AA_CTTTTT__X_XX_XX_XX_X
10._RUQ_1531
___AA-CCTT___X_XX_XX_XX_X
11._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
12._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
13._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
14._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
15._GC-05-137-3-39
CCCCCTAACTCCTTTTAAGGX_XX_XX_XX_X
16._PA_156_[PER]
CC__AA_CCTTTT__X_XX_XX_XX_X
17._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
18._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
19._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
20._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
21._RUQ_1531
CCCC_AA_CCTTTT__X_XX_XX_XX_X
22._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
23._PA_156_[PER]
CCCC_AA_CCTTTT__X_XX_XX_XX_X
24._PA156[PER]
CC_________X_XX_XX_XX_X
25._RUQ_1531
_CC__CT_TT___X_XX_XX_XX_X
26._RUQ_1531
GG_AG__GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-138-3-40

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._PA_156_[PER] GC-05-138-3-40

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-138-3-40

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._PA_156_[PER] GC-05-138-3-40

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

10._PA_156_[PER] RUQ_1531

78.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER] GC-05-137-3-39

75.3 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

75 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

74.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

74.5 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._PA_156_[PER]

71.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

17._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

18._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

19._PA_156_[PER]

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

20._PA_156_[PER]

70 %
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

21._PA_156_[PER] RUQ_1531

70 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._PA_156_[PER]

70 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

23._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._PA_156_[PER] PA156[PER]

68 %
25 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

25._PA_156_[PER] RUQ_1531

59.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

26._PA_156_[PER] RUQ_1531

40 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240